| 6-Aug-05 | Macclesfield Town | Home | League | 2-1 | Keith, Echanomi | 3600 | |
| 9-Aug-05 | Bury | Away | League | 2-1 | Zakuani, Tudor | 2053 | |
| 13-Aug-05 | Darlington | Away | League | 1-0 | Lockwood (pen) | 4021 | |
| 20-Aug-05 | Rochdale | Home | League | 1-4 | Echanomi | 4223 | |
| 23-Aug-05 | Luton Town | Home | LC r1 | 1-3 | McMahon | 2383 | |
| 27-Aug-05 | Cheltenham Town | Away | League | 1-1 | Mackie | 3274 | |
| 29-Aug-05 | Shrewsbury Town | Home | League | 0-1 | | 3742 | |
| 3-Sep-05 | Bristol Rovers | Home | League | 2-3 | McMahon, Alexander | 3481 | |
| 10-Sep-05 | Barnet | Away | League | 3-2 | Alexander (2), Ibehre | 3722 | |
| 17-Sep-05 | Wrexham | Home | League | 1-1 | Alexander | 3733 | |
| 24-Sep-05 | Carlisle United | Away | League | 3-2 | Lockwood (pen), Alexander, Ibehre | 6584 | |
| 27-Sep-05 | Torquay United | Home | League | 2-1 | Alexander, Ibehre | 4091 | |
| 1-Oct-05 | Mansfield Town | Home | League | 3-1 | Alexander, Keith, Echanomi | 4164 | |
| 8-Oct-05 | Stockport County | Away | League | 1-1 | Alexander | 3901 | |
| 15-Oct-05 | Lincoln City | Home | League | 1-1 | Alexander | 4837 | |
| 18-Oct-05 | Yeovil Town | Home | LDV s.r1 | 2-0 | Hanson, Alexander | 958 | |
| 22-Oct-05 | Grimsby Town | Away | League | 1-0 | Easton | 4963 | |
| 29-Oct-05 | Oxford United | Home | League | 1-0 | Easton | 5268 | |
| 5-Nov-05 | Chesterfield | Home | FAC r1 | 0-0 | | 3554 | |
| 12-Nov-05 | Peterborough United | Away | League | 1-1 | Miller | 5341 | |
| 16-Nov-05 | Chesterfield | Away | FAC r1r | 2-1 | Mackie, Tudor | 4895 | |
| 19-Nov-05 | Stockport County | Home | League | 2-2 | Raynes (og), Mackie | 4997 | |
| 22-Nov-05 | Oxford United | Away | LDV s.r2 | 0-1 | | 1521 | |
| 26-Nov-05 | Macclesfield Town | Away | League | 0-0 | | 1649 | |
| 3-Dec-05 | Rushden & Diamonds | Away | FAC r2 | 1-0 | Steele | 3245 | |
| 6-Dec-05 | Chester City | Home | League | 0-1 | | 3463 | |
| 10-Dec-05 | Bury | Home | League | 0-1 | | 4095 | |
| 17-Dec-05 | Rochdale | Away | League | 4-2 | Alexander (2), Tudor, Mackie | 2666 | |
| 26-Dec-05 | Rushden & Diamonds | Home | League | 5-1 | Steele (2), Mackie, Ibehre, Easton | 4558 | |
| 29-Dec-05 | Wycombe Wanderers | Away | League | 2-4 | Steele, Tudor | 6240 | |
| 31-Dec-05 | Notts County | Home | League | 1-0 | Ibehre | 3715 | |
| 2-Jan-06 | Boston United | Away | League | 2-1 | Ibehre, Alexander | 2689 | |
| 8-Jan-06 | Fulham | Away | FAC r3 | 2-1 | Easton, Keith | 13394 | |
| 14-Jan-06 | Northampton Town | Home | League | 1-2 | Mackie | 5445 | |
| 21-Jan-06 | Wrexham | Away | League | 2-1 | Alexander, Lockwood (pen) | 5031 | |
| 28-Jan-06 | Charlton Athletic | Away | FAC r4 | 1-2 | Steele | 22029 | |
| 31-Jan-06 | Bristol Rovers | Away | League | 3-0 | Ibehre (2), Simpson | 5966 | |
| 4-Feb-06 | Torquay United | Away | League | 0-2 | | 2687 | |
| 11-Feb-06 | Carlisle United | Home | League | 0-0 | | 5833 | |
| 14-Feb-06 | Northampton Town | Away | League | 1-1 | Mackie | 5552 | |
| 18-Feb-06 | Chester City | Away | League | 2-0 | Lockwood (pen), Connor | 2210 | |
| 25-Feb-06 | Darlington | Home | League | 1-0 | Tudor | 4767 | |
| 28-Feb-06 | Barnet | Home | League | 0-0 | | 4910 | |
| 4-Mar-06 | Shrewsbury Town | Away | League | 3-3 | Lockwood, Connor, Tann | 3471 | |
| 11-Mar-06 | Cheltenham Town | Home | League | 1-0 | Connor | 4879 | |
| 18-Mar-06 | Rushden & Diamonds | Away | League | 0-1 | | 3679 | |
| 25-Mar-06 | Wycombe Wanderers | Home | League | 1-0 | Connor | 6720 | |
| 1-Apr-06 | Notts County | Away | League | 1-1 | Corden | 5007 | |
| 8-Apr-06 | Boston United | Home | League | 2-0 | Lockwood (pen), Connor | 4391 | |
| 15-Apr-06 | Mansfield Town | Away | League | 1-0 | Lockwood (pen) | 4763 | |
| 17-Apr-06 | Grimsby Town | Home | League | 0-0 | | 6582 | |
| 22-Apr-06 | Lincoln City | Away | League | 1-1 | Mackie | 5660 | |
| 29-Apr-06 | Peterborough United | Home | League | 2-1 | Lockwood (pen), Corden | 6591 | |
| 6-May-06 | Oxford United | Away | League | 3-2 | Easton, Alexander, Steele | 12243 | |